Index A | B | D | E | F | G | L | M | N | O | P | Q | R | S | U | V | W A add_node() (drawNA.lattice.route.LatticeRoute method) add_nodes() (drawNA.lattice.route.LatticeRoute method) add_strand() (drawNA.oxdna.system.System method) add_strands() (drawNA.oxdna.system.System method) all_same() (in module drawNA.lattice._lattice) angle() (drawNA.tools.DNANode property) B bonds() (drawNA.oxdna.strand.Strand property) (drawNA.oxdna.system.System property) BoundaryPolygon (class in drawNA.polygons) D dataframe() (drawNA.oxdna.strand.Strand property) DNAEdge (class in drawNA.tools) DNANode (class in drawNA.tools) drawNA module drawNA.lattice module drawNA.lattice._lattice module drawNA.lattice.edge module drawNA.lattice.node module drawNA.lattice.route module drawNA.lattice.utils module drawNA.oxdna module drawNA.oxdna.nucleotide module drawNA.oxdna.strand module drawNA.oxdna.system module drawNA.oxdna.utils module drawNA.polygons module drawNA.readers module drawNA.tools module E Edge (class in drawNA.polygons) edges() (drawNA.polygons.BoundaryPolygon property) F find_closest() (in module drawNA.lattice.utils) find_crossover_locations() (in module drawNA.lattice.utils) G get_rotation_matrix() (in module drawNA.oxdna.utils) L lammps() (drawNA.oxdna.nucleotide.Nucleotide property) (drawNA.oxdna.strand.Strand property) (drawNA.oxdna.system.System property) lammps_string() (in module drawNA.oxdna.system) LAMMPSDumpReader (class in drawNA.readers) LatticeEdge (class in drawNA.lattice.edge) LatticeNode (class in drawNA.lattice.node) LatticeRoute (class in drawNA.lattice.route) length() (drawNA.tools.DNAEdge property) M make_5p() (drawNA.oxdna.nucleotide.Nucleotide method) make_across() (drawNA.oxdna.nucleotide.Nucleotide method) modify_lattice_row() (in module drawNA.lattice._lattice) module drawNA drawNA.lattice drawNA.lattice._lattice drawNA.lattice.edge drawNA.lattice.node drawNA.lattice.route drawNA.lattice.utils drawNA.oxdna drawNA.oxdna.nucleotide drawNA.oxdna.strand drawNA.oxdna.system drawNA.oxdna.utils drawNA.polygons drawNA.readers drawNA.tools N next_5p() (in module drawNA.oxdna.utils) node() (drawNA.tools.DNAEdge method) nt_length() (drawNA.tools.DNAEdge property) Nucleotide (class in drawNA.oxdna.nucleotide) nucleotides() (drawNA.oxdna.strand.Strand property) O oxDNA_string() (in module drawNA.oxdna.system) P perp_vector() (drawNA.tools.DNAEdge property) plot2D() (drawNA.polygons.BoundaryPolygon method) pos_back() (drawNA.oxdna.nucleotide.Nucleotide property) pos_back_rel() (drawNA.oxdna.nucleotide.Nucleotide property) pos_base() (drawNA.oxdna.nucleotide.Nucleotide property) pos_stack() (drawNA.oxdna.nucleotide.Nucleotide property) Q quat_to_matrix() (in module drawNA.readers) quaternion() (drawNA.oxdna.nucleotide.Nucleotide property) R round_to_multiple() (in module drawNA.oxdna.utils) S segments() (drawNA.tools.DNAEdge method) series() (drawNA.oxdna.nucleotide.Nucleotide property) side() (in module drawNA.lattice._lattice) Strand (class in drawNA.oxdna.strand) summary() (drawNA.tools.DNAEdge property) System (class in drawNA.oxdna.system) U update_strands() (drawNA.lattice.route.LatticeRoute method) V vector_3p() (drawNA.tools.DNANode property) vector_5p() (drawNA.tools.DNANode property) Vertex (class in drawNA.polygons) W write_LAMMPS() (drawNA.oxdna.system.System method) write_oxDNA() (drawNA.oxdna.system.System method) write_PLY() (drawNA.polygons.BoundaryPolygon method)